SPELL - Nematode - Dataset Listing
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SPELL Version 2.0.3

Publication Num.
Conditions
Brief Description PubMed ID
Engstrom PG et al., 2013 3 Systematic evaluation of spliced alignment programs for RNA-seq data.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00045464.ce.rs.csv (details)
24185836
Eom HJ et al., 2015 3 A systems toxicology approach on the mechanism of uptake and toxicity of MWCNT in Caenorhabditis elegans.
GEO Record: GSE24847 Platform: GPL200
Download gene-centric, log2 transformed data: WBPaper00047021.ce.mr.csv (details)
26111764
Lockhead D et al., 2016 3 The tubulin repertoire of C. elegans sensory neurons and its context-dependent role in process outgrowth.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00050344.ce.rs.csv (details)
27654945
Chatterjee N et al., 2016 3 A systems toxicology approach reveals the Wnt-MAPK crosstalk pathway mediated reproductive failure in Caenorhabditis elegans exposed to graphene oxide (GO) but not to reduced graphene oxide (rGO).
GEO Record: GSE84489 Platform: GPL200
Download gene-centric, log2 transformed data: WBPaper00050494.ce.mr.csv (details)
27901397
Iatsenko I et al., 2013 3 New role for DCR-1/dicer in Caenorhabditis elegans innate immunity against the highly virulent bacterium Bacillus thuringiensis DB27.
GEO Record: GSE43905 Platform: GPL10094
Download gene-centric, log2 transformed data: WBPaper00044013.ce.mr.csv (details)
23918784
Sinha A et al., 2014 3 A functional genomic screen for evolutionarily conserved genes required for lifespan and immunity in germline-deficient C. elegans.
GEO Record: GSE44703 Platform: GPL10094
Download gene-centric, log2 transformed data: WBPaper00045571.ce.mr.csv (details)
25093668
Chang HW et al., 2017 4 Transcription factors CEP-1/p53 and CEH-23 collaborate with AAK-2/AMPK to modulate longevity in Caenorhabditis elegans.
GEO Record: GSE67754 Platform: GPL10094
Download gene-centric, log2 transformed data: WBPaper00051304.ce.mr.csv (details)
28560849
Hahm JH et al., 2020 4 A cellular surveillance and defense system that delays aging phenotypes in C. elegans.
GEO Record: GSE99020 Platform: GPL10094
Download gene-centric, log2 transformed data: WBPaper00059610.ce.mr.csv (details)
32350153
Kniazeva M et al., 2004 4 Monomethyl branched-chain fatty acids play an essential role in Caenorhabditis elegans development.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00024532.ce.mr.csv (details)
15340492
Oh M et al., 2022 4 Remofuscin induces xenobiotic detoxification via a lysosome-to-nucleus signaling pathway to extend the Caenorhabditis elegans lifespan.
GEO Record: GSE144059 Platform: GPL11346
Download gene-centric, log2 transformed data: WBPaper00064093.ce.mr.csv (details)
35504961
Chen N et al., 2006 4 Identification of ciliary and ciliopathy genes in Caenorhabditis elegans through comparative genomics.
GEO Record: GSE6563 Platform: GPL200
Download gene-centric, log2 transformed data: WBPaper00028949.ce.mr.csv (details)
17187676
Rechtsteiner A et al., 2010 4 The histone H3K36 methyltransferase MES-4 acts epigenetically to transmit the memory of germline gene expression to progeny.
GEO Record: GSE58759 Platform: GPL18856
Download gene-centric, log2 transformed data: WBPaper00037131.ce.mr.csv (details)
20824077
Budovskaya YV et al., 2008 4 An elt-3/elt-5/elt-6 GATA transcription circuit guides aging in C. elegans.
GEO Record: GSE12094 GSE12166 GSE12167 GSE12168 Platform: GPL7065 GPL7066 GPL7067 GPL7068
Download gene-centric, log2 transformed data: WBPaper00032062.ce.mr.csv (details)
18662544
Garrigues JM et al., 2015 4 Defining heterochromatin in C. elegans through genome-wide analysis of the heterochromatin protein 1 homolog HPL-2.
GEO Record: GSE58760 GSE58764 Platform: GPL18855
Download gene-centric, log2 transformed data: WBPaper00046104.ce.mr.csv (details)
25467431
McElwee J et al., 2003 4 Transcriptional outputs of the Caenorhabditis elegans forkhead protein DAF-16.
GEO Record: GSE3089 Platform: GPL2653
Download gene-centric, log2 transformed data: WBPaper00005896.ce.mr.csv (details)
12882324
Bender LB et al., 2006 4 MES-4: an autosome-associated histone methyltransferase that participates in silencing the X chromosomes in the C. elegans germ line.
GEO Record: GSE5454 Platform: GPL3860
Download gene-centric, log2 transformed data: WBPaper00028483.ce.mr.csv (details)
16968818
Spike CA et al., 2008 4 DEPS-1 promotes P-granule assembly and RNA interference in C. elegans germ cells.
GEO Record: GSE9993 Platform: GPL3860
Download gene-centric, log2 transformed data: WBPaper00031477.ce.mr.csv (details)
18234720
Waters K et al., 2010 4 Genome-wide analysis of germ cell proliferation in C.elegans identifies VRK-1 as a key regulator of CEP-1/p53.
GEO Record: GSE21531 Platform: GPL540
Download gene-centric, log2 transformed data: WBPaper00036429.ce.mr.csv (details)
20599896
Morgan PG et al., 2015 4 Comparison of proteomic and metabolomic profiles of mutants of the mitochondrial respiratory chain in Caenorhabditis elegans.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00046217.ce.ms.csv (details)
25530493
Hattori A et al., 2013 4 The Caenorhabditis elegans JNK signaling pathway activates expression of stress response genes by derepressing the Fos/HDAC repressor complex.
GEO Record: GSE42703 Platform: GPL200
Download gene-centric, log2 transformed data: WBPaper00042067.ce.mr.csv (details)
23437011
Smith LM et al., 2012 4 Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes.
GEO Record: GSE40507 Platform: GPL13776
Download gene-centric, log2 transformed data: WBPaper00041119.ce.rs.csv (details)
22614838
Gusarov I et al., 2013 4 Bacterial nitric oxide extends the lifespan of C. elegans.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00042034.ce.rs.csv (details)
23415229
Schmeisser S et al., 2013 4 Mitochondrial hormesis links low-dose arsenite exposure to lifespan extension.
GEO Record: GSE46257 Platform: GPL13776
Download gene-centric, log2 transformed data: WBPaper00042179.ce.rs.csv (details)
23534459
Conine CC et al., 2013 4 Argonautes promote male fertility and provide a paternal memory of germline gene expression in C. elegans.
GEO Record: GSE49672 Platform: GPL13776
Download gene-centric, log2 transformed data: WBPaper00044616.ce.rs.csv (details)
24360276
Wang JJ et al., 2014 4 The influences of PRG-1 on the expression of small RNAs and mRNAs.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00045316.ce.rs.csv (details)
24884413
Golegaonkar S et al., 2015 4 Rifampicin reduces advanced glycation end products and activates DAF-16 to increase lifespan in Caenorhabditis elegans.
GEO Record: GSE45292 Platform: GPL200
Download gene-centric, log2 transformed data: WBPaper00046496.ce.mr.csv (details)
25720500
Wang Z et al., 2015 4 The nuclear receptor DAF-12 regulates nutrient metabolism and reproductive growth in nematodes.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00046548.ce.mr.csv (details)
25774872
Kosmaczewski SG et al., 2014 4 The RtcB RNA ligase is an essential component of the metazoan unfolded protein response.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00045971.ce.rs.csv (details)
25366321
Arnold A et al., 2014 4 Functional characterization of C. elegans Y-box-binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00045985.ce.rs.csv (details)
25378320
van Wolfswinkel JC et al., 2009 4 CDE-1 affects chromosome segregation through uridylation of CSR-1-bound siRNAs.
GEO Record: GSE18202 Platform: GPL2875
Download gene-centric, log2 transformed data: WBPaper00035269.ce.mr.csv (details)
19804759