SPELL - Nematode - Dataset Listing
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SPELL Version 2.0.3

Publication Num.
Conditions
Brief Description PubMed ID
Head B et al., 2014 14 Recovery from an acute infection in C. elegans requires the GATA transcription factor ELT-2.
GEO Record: GSE54212 Platform: GPL11346
Download gene-centric, log2 transformed data: WBPaper00045918.ce.mr.csv (details)
25340560
Menzel R et al., 2009 15 Gene expression profiling to characterize sediment toxicity--a pilot study using Caenorhabditis elegans whole genome microarrays.
GEO Record: GSE11837 Platform: GPL6965
Download gene-centric, log2 transformed data: WBPaper00033070.ce.mr.csv (details)
19366437
Selch F et al., 2008 15 Genomic response of the nematode Caenorhabditis elegans to spaceflight.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00031662.ce.mr.csv (details)
18392117
Grishok A et al., 2008 15 RNA interference and retinoblastoma-related genes are required for repression of endogenous siRNA targets in Caenorhabditis elegans.
GEO Record: GSE13258 Platform: GPL200
Download gene-centric, log2 transformed data: WBPaper00032425.ce.mr.csv (details)
19073934
Wright JE et al., 2011 15 A quantitative RNA code for mRNA target selection by the germline fate determinant GLD-1.
GEO Record: GSE21591 Platform: GPL200
Download gene-centric, log2 transformed data: WBPaper00037901.ce.mr.csv (details)
21169991
Kudlow BA et al., 2012 15 Systematic analysis of tissue-restricted miRISCs reveals a broad role for microRNAs in suppressing basal activity of the C. elegans pathogen response.
GEO Record: GSE36419 Platform: GPL5883
Download gene-centric, log2 transformed data: WBPaper00040985.ce.mr.csv (details)
22503424
Depuydt G et al., 2013 15 Reduced insulin/insulin-like growth factor-1 signaling and dietary restriction inhibit translation but preserve muscle mass in Caenorhabditis elegans.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00044128.ce.ms.csv (details)
24002365
Sahu SN et al., 2012 15 Genomic analysis of immune response against Vibrio cholerae hemolysin in Caenorhabditis elegans.
GEO Record: GSE34026 Platform: GPL200
Download gene-centric, log2 transformed data: WBPaper00041163.ce.mr.csv (details)
22675448
Lamm AT et al., 2011 15 Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome.
GEO Record: GSE22410 Platform: GPL9269
Download gene-centric, log2 transformed data: WBPaper00037948.ce.rs.csv (details)
21177965
Stoeckius M et al., 2014 15 Paternal RNA contributions in the Caenorhabditis elegans zygote.
GEO Record: GSE57351 Platform: GPL13776
Download gene-centric, log2 transformed data: WBPaper00045359.ce.rs.csv (details)
24894551
Saul N et al., 2015 15 Adsorbable organic bromine compounds (AOBr) in aquatic samples: a nematode-based toxicogenomic assessment of the exposure hazard.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00046853.ce.mr.csv (details)
25994267
Mueller MM et al., 2014 15 DAF-16/FOXO and EGL-27/GATA promote developmental growth in response to persistent somatic DNA damage.
GEO Record: GSE47778 GSE51161 GSE51162 Platform: GPL200
Download gene-centric, log2 transformed data: WBPaper00047070_1.ce.mr.csv (details)
25419847
Calvert S et al., 2015 15 A network pharmacology approach reveals new candidate caloric restriction mimetics in C. elegans.
GEO Record: GSE64336 Platform: GPL200
Download gene-centric, log2 transformed data: WBPaper00048989.ce.mr.csv (details)
26676933
Spiegler V et al., 2017 15 Transcriptome analysis reveals molecular anthelmintic effects of procyanidins in C. elegans.
GEO Record: GSE101680 Platform: GPL19230
Download gene-centric, log2 transformed data: WBPaper00053092.ce.mr.csv (details)
28926584
Starnes D et al., 2019 15 Toxicogenomic responses of Caenorhabditis elegans to pristine and transformed zinc oxide nanoparticles.
GEO Record: GSE114881 Platform: GPL19230
Download gene-centric, log2 transformed data: WBPaper00056297.ce.mr.csv (details)
30823346
Egge N et al., 2021 15 Trauma-induced regulation of VHP-1 modulates the cellular response to mechanical stress.
GEO Record: GSE148325 Platform: GPL200
Download gene-centric, log2 transformed data: WBPaper00061115.ce.mr.csv (details)
33674585
Korzelius J et al., 2011 15 Caenorhabditis elegans cyclin D/CDK4 and cyclin E/CDK2 induce distinct cell cycle re-entry programs in differentiated muscle cells.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00040426.ce.mr.csv (details)
22102824
Sinha A et al., 2012 15 System wide analysis of the evolution of innate immunity in the nematode model species Caenorhabditis elegans and Pristionchus pacificus.
GEO Record: GSE36517 GSE36519 GSE36521 GSE36523 GSE36636 Platform: GPL14372
Download gene-centric, log2 transformed data: WBPaper00041606.ce.mr.csv (details)
23028509
Sinha A et al., 2012 15 System wide analysis of the evolution of innate immunity in the nematode model species Caenorhabditis elegans and Pristionchus pacificus.
GEO Record: GSE36517 GSE36519 GSE36521 GSE36523 GSE36636 Platform: GPL14372
Download gene-centric, log2 transformed data: WBPaper00041606.ppa.mr.csv (details)
23028509
Andersen EC et al., 2014 15 A variant in the neuropeptide receptor npr-1 is a major determinant of Caenorhabditis elegans growth and physiology.
GEO Record: GSE49307 Platform: GPL8209
Download gene-centric, log2 transformed data: WBPaper00044939.ce.mr.csv (details)
24586193
Zuckerman B et al., 2017 16 Characterization of gene expression associated with the adaptation of the nematode C. elegans to hypoxia and reoxygenation stress reveals an unexpected function of the neuroglobin GLB-5 in innate immunity.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00051223.ce.mr.csv (details)
28495447
Camacho J et al., 2022 16 Assessment of the effects of organic vs. inorganic arsenic and mercury in Caenorhabditis elegans.
GEO Record: GSE196891 Platform: GPL10094
Download gene-centric, log2 transformed data: WBPaper00064061.ce.mr.csv (details)
35602005
Kim Wong et al., 0 16 Comparative analysis of SAGE and microarray technologies for global transcription profiling of development in Caenorhabditis elegans
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00026950.ce.mr.csv (details)
0
Vasquez-Rifo A et al., 2012 16 Developmental characterization of the microRNA-specific C. elegans Argonautes alg-1 and alg-2.
GEO Record: GSE35505 Platform: GPL15181
Download gene-centric, log2 transformed data: WBPaper00040911.ce.mr.csv (details)
22448270
Couillault C et al., 2004 16 TLR-independent control of innate immunity in Caenorhabditis elegans by the TIR domain adaptor protein TIR-1, an ortholog of human SARM.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00006488.ce.mr.csv (details)
15048112
Fisher AL et al., 2006 16 The nuclear hormone receptor DAF-12 has opposing effects on Caenorhabditis elegans lifespan and regulates genes repressed in multiple long-lived worms.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00027339.ce.mr.csv (details)
16626392
Maniar JM et al., 2011 16 EGO-1, a C. elegans RdRP, modulates gene expression via production of mRNA-templated short antisense RNAs.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00038226.ce.rs.csv (details)
21396820
Stadler M et al., 2011 16 Wobble base-pairing slows in vivo translation elongation in metazoans.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00040379.ce.rs.csv (details)
22045228
Ortiz MA et al., 2014 16 A new dataset of spermatogenic vs. oogenic transcriptomes in the nematode Caenorhabditis elegans.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00045521.ce.rs.csv (details)
25060624
Ji YJ et al., 2020 16 C9orf72/ALFA-1 controls TFEB/HLH-30-dependent metabolism through dynamic regulation ofrag GTPases.
GEO Record: GSE137355 Platform: GPL19230
Download gene-centric, log2 transformed data: WBPaper00059541.ce.mr.csv (details)
32282804