SPELL - Nematode - Dataset Details
New Search

Dataset Listing

Show Expression Levels

Download Expression Data

About the Website

SPELL Version 2.0.3

Citation Karengera A, Verburg I, Sterken MG, Riksen JAG, Murk AJ, Dinkla IJT. Determining Toxic Potencies of Water-Soluble Contaminants in Wastewater Influents and Effluent Using Gene Expression Profiling in C. elegans as a Bioanalytical Tool. Arch Environ Contam Toxicol, 2022.
PubMed ID 36190544
Short Description Determining Toxic Potencies of Water-Soluble Contaminants in Wastewater Influents and Effluent Using Gene Expression Profiling in C. elegans as a Bioanalytical Tool.
GEO Record: N.A. Platform: N.A.
Download gene-centric, log2 transformed data: WBPaper00064552.ce.mr.csv
# of Conditions 24
Full Description 1316625150_help With chemical analysis, it is impossible to qualify and quantify the toxic potency of especially hydrophilic bioactive contaminants. In this study, we applied the nematode C. elegans as a model organism for detecting the toxic potency of whole influent wastewater samples. Gene expression in the nematode was used as bioanalytical tool to reveal the presence, type and potency of molecular pathways induced by 24-h exposure to wastewater from a hospital (H), nursing home (N), community (C), and influent (I) and treated effluent (E) from a local wastewater treatment plant. Exposure to influent water significantly altered expression of 464 genes, while only two genes were differentially expressed in nematodes treated with effluent. This indicates a significant decrease in bioactive pollutant-load after wastewater treatment. Surface water receiving the effluent did not induce any genes in exposed nematodes. A subset of 209 genes was differentially expressed in all untreated wastewaters, including cytochromes P450 and C-type lectins related to the nematode's xenobiotic metabolism and immune response, respectively. Different subsets of genes responded to particular waste streams making them candidates to fingerprint-specific wastewater sources. This study shows that gene expression profiling in C. elegans can be used for mechanism-based identification of hydrophilic bioactive compounds and fingerprinting of specific wastewaters. More comprehensive than with chemical analysis, it can demonstrate the effective overall removal of bioactive compounds through wastewater treatment. This bioanalytical tool can also be applied in the process of identification of the bioactive compounds via a process of toxicity identification evaluation.
Experimental Details:
WBPaper00064552:Community_Sample16
WBPaper00064552:Community_Sample17
WBPaper00064552:Community_Sample3
WBPaper00064552:Hospital_Sample13
WBPaper00064552:Hospital_Sample5
WBPaper00064552:Hospital_Sample7
WBPaper00064552:NursingHome_Sample2
WBPaper00064552:NursingHome_Sample21
WBPaper00064552:NursingHome_Sample4
WBPaper00064552:Surface_Sample1
WBPaper00064552:Surface_Sample11
WBPaper00064552:Surface_Sample15
WBPaper00064552:Surface_Sample18
WBPaper00064552:Surface_Sample20
WBPaper00064552:Surface_Sample22
WBPaper00064552:Surface_Sample24
WBPaper00064552:Surface_Sample6
WBPaper00064552:Surface_Sample9
WBPaper00064552:WasteEffluent_Sample12
WBPaper00064552:WasteEffluent_Sample14
WBPaper00064552:WasteEffluent_Sample19
WBPaper00064552:WasteInfluent_Sample10
WBPaper00064552:WasteInfluent_Sample23
WBPaper00064552:WasteInfluent_Sample8.
Tags 1316625150_help
Method: microarray, Species: Caenorhabditis elegans, Topic: response to chemical