SPELL - Nematode - Dataset Details
New Search

Dataset Listing

Show Expression Levels

Download Expression Data

About the Website

SPELL Version 2.0.3

Citation Tanguy M, Veron L, Stempor P, Ahringer J, Sarkies P, Miska EA. An Alternative STAT Signaling Pathway Acts in Viral Immunity in Caenorhabditis elegans. MBio, 2017.
PubMed ID 28874466
Short Description An Alternative STAT Signaling Pathway Acts in Viral Immunity in Caenorhabditis elegans.
GEO Record: GSE99586 Platform: GPL19230
Download gene-centric, log2 transformed data: WBPaper00053020.ce.mr.csv
# of Conditions 24
Full Description 1316625150_help Across metazoans, innate immunity is vital in defending organisms against viral infection. In mammals, antiviral innate immunity is orchestrated by interferon signaling, activating the STAT transcription factors downstream of the JAK kinases to induce expression of antiviral effector genes. In the nematode Caenorhabditiselegans, which lacks the interferon system, the major antiviral response so far described is RNA interference (RNAi), but whether additional gene expression responses are employed is not known. Here we show that, despite the absence of both interferon and JAK, the C.elegans STAT homolog STA-1 orchestrates antiviral immunity. Intriguingly, mutants lacking STA-1 are less permissive to antiviral infection. Using gene expression analysis and chromatin immunoprecipitation, we show that, in contrast to the mammalian pathway, STA-1 acts mostly as a transcriptional repressor. Thus, STA-1 might act to suppress a constitutive antiviral response in the absence of infection. Additionally, using a reverse genetic screen, we identify the kinase SID-3 as a new component of the response to infection, which, along with STA-1, participates in the transcriptional regulatory network of the immune response. Our work uncovers novel physiological roles for two factors in viral infection: a SID protein acting independently of RNAi and a STAT protein acting in C.elegans antiviral immunity. Together, these results illustrate the complex evolutionary trajectory displayed by innate immune signaling pathways across metazoan organisms.IMPORTANCE Since innate immunity was discovered, a diversity of pathways has arisen as powerful first-line defense mechanisms to fight viral infection. RNA interference, reported mostly in invertebrates and plants, as well as the mammalian interferon response and JAK/STAT pathway are key in RNA virus innate immunity. We studied infection by the Orsay virus in Caenorhabditis elegans, where RNAi is known to be a potent antiviral defense. We show that, in addition to its RNAi pathway, C.elegans utilizes an alternative STAT pathway to control the levels of viral infection. We identify the transcription factor STA-1 and the kinase SID-3 as two components of this response. Our study defines C.elegans as a new example of the diversity of antiviral strategies.
Experimental Details:
WBPaper00053020:N2_OrsayVirus-infected_rep1
WBPaper00053020:N2_OrsayVirus-infected_rep2
WBPaper00053020:N2_OrsayVirus-infected_rep3
WBPaper00053020:N2_control_rep1
WBPaper00053020:N2_control_rep2
WBPaper00053020:N2_control_rep3
WBPaper00053020:drh-1(ok3495)_OrsayVirus-infected_rep1
WBPaper00053020:drh-1(ok3495)_OrsayVirus-infected_rep2
WBPaper00053020:drh-1(ok3495)_OrsayVirus-infected_rep3
WBPaper00053020:drh-1(ok3495)_control_rep1
WBPaper00053020:drh-1(ok3495)_control_rep2
WBPaper00053020:drh-1(ok3495)_control_rep3
WBPaper00053020:JU1580_OrsayVirus-infected_rep1
WBPaper00053020:JU1580_OrsayVirus-infected_rep2
WBPaper00053020:JU1580_OrsayVirus-infected_rep3
WBPaper00053020:JU1580_control_rep1
WBPaper00053020:JU1580_control_rep2
WBPaper00053020:JU1580_control_rep3
WBPaper00053020:JU1580-DRH1_OrsayVirus-infected_rep1
WBPaper00053020:JU1580-DRH1_OrsayVirus-infected_rep2
WBPaper00053020:JU1580-DRH1_OrsayVirus-infected_rep3
WBPaper00053020:JU1580-DRH1_control_rep1
WBPaper00053020:JU1580-DRH1_control_rep2
WBPaper00053020:JU1580-DRH1_control_rep3.
Tags 1316625150_help
Method: microarray, Species: Caenorhabditis elegans, Topic: innate immune response